rs30176339 SNP Detail

Summary

• ID
  rs30176339
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15044177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA GCCACTAATG TACTACTGCG
  H
  GCAGAAAGTG CCCACGCAGG CGTGT                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46248437	mCV23054525	ABI	CRAMUS_MOUSE	f	SNP	C	A		A
ss47420502	NES11493046	PERLEGEN	MM_PANEL2	f	SNP			C		C	T	T	T	C
ss148694494	ENSMUSSNP4135824	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30176339					SNP	C	A	C	A	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420502	NES11493046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15044177 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	462 bp upstream
Rr368499	regulatory region 368499	190 bp upstream
Rr368500	regulatory region 368500	1990 bp upstream
Rr660150	regulatory region 660150	1029 bp distal
Rr660151	regulatory region 660151	1314 bp distal
Rr660152	regulatory region 660152	within coordinates
Rr660153	regulatory region 660153	473 bp proximal
Rr660154	regulatory region 660154	1856 bp proximal
Tssr76473	transcription start site region 76473	1167 bp downstream
Tssr76474	transcription start site region 76474	470 bp upstream
Tssr76475	transcription start site region 76475	1951 bp upstream
Tssr76476	transcription start site region 76476	1979 bp upstream
Tssr80482	transcription start site region 80482	308 bp downstream
Tssr80483	transcription start site region 80483	1817 bp downstream