rs30176886 SNP Detail

Summary

• ID
  rs30176886
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47507170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCTTCT GAAATTAAAT
  TAAGGGGGCA CCCTGCCCAC CTCACCTGAA AGCCAGCTAT ACCTTTGCCA TCTTTGGATT
  TCTTCCGTAT AGGCATGCTA GGGTCAGTGA CAGGTGAGGT ACTTCGGTTG TTCTTGGTCT
  TTCGGTCTGT GAAGAAAAGG CAGGTAAGCA GAAAGCTGAA GTCAAAGTTA GCTAGGCAAG
  S
  CAGATCAGTA AGCTGGGAGT CTAATCCTTC CCCACGGCAA CAGCCAAGAA GTATCTATAC
  CACATCAAGG CTACCACATG AGGAGATGAG AGATTTGCAA ATGAGAGACC TTTAGATTCC
  AAAGTTCAGG TGAACAGCTA GGCCAGACAT TCTTGATCTA ACTTTTGAAA TGGGAGATAG
  CCTAAAGGTG TTGCTGTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46920976	NES10948158	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30176886					SNP	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920976	NES10948158	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47507170 () rs orientation: forward

Symbol	Name	Function Class
Elf4	E74 like ETS transcription factor 4	within coordinates
Rr4085	regulatory region 4085	770 bp distal
Rr9784	regulatory region 9784	within coordinates
Tssr163285	transcription start site region 163285	855 bp downstream