rs30176889 SNP Detail

Summary

• ID
  rs30176889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47507228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG CAACAGCCAA GAAGTATCTA
  Y
  ACCACATCAA GGCTACCACA TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46474851	mCV25196692	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss46920979	NES10948159	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C		C	C	C	C		T
ss134165349	ENSMUSSNP6730716	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325889094	CHEV_X_45771528	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30176889					SNP	C	C	C	C	C	C	T	T	C	T	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920979	NES10948159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47507228 () rs orientation: forward

Symbol	Name	Function Class
Elf4	E74 like ETS transcription factor 4	within coordinates
Rr4085	regulatory region 4085	828 bp distal
Rr9784	regulatory region 9784	within coordinates
Tssr163285	transcription start site region 163285	797 bp downstream