rs30177254 SNP Detail

Summary

• ID
  rs30177254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52220838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA GAAAATCCTC TGAAAAAAAA
  Y
  TTCCCTAGAA GGCCTCTACA ACCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss39159283	mCV24787464	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs30177254					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52220838 () rs orientation: forward

Symbol	Name	Function Class
Arhgef40	Rho guanine nucleotide exchange factor 40	1338 bp upstream
Cpgi6430	CpG island 6430	1003 bp proximal
Gm62631	predicted gene, 62631	within coordinates
Rr491846	regulatory region 491846	47 bp proximal
Rr491847	regulatory region 491847	967 bp proximal
Rr491848	regulatory region 491848	1561 bp proximal
Tssr125437	transcription start site region 125437	1107 bp upstream
Tssr125438	transcription start site region 125438	1145 bp upstream
Tssr125439	transcription start site region 125439	1315 bp upstream
Tssr125440	transcription start site region 125440	1445 bp upstream
Tssr125441	transcription start site region 125441	1476 bp upstream