rs30177325 SNP Detail

Summary

• ID
  rs30177325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTAGCA ACCTGAAAGA
  GGCATTGCAA ATTTAGGTTT ATTATCCTAA CACAGTCTTT CATCTGCCGG GGTTGAGTCA
  AAATCAACCT GGTCACACCA CTGCGAGTAG TCTGAAATTT GGGAACTTGG TGAGAAAAGT
  CTAGGAACAG GGACACAGCG AAGGAAAAAT GTGGTAGAGA GAAGCCAGCA AATCAAGGAG
  Y
  ACACGCATAG GTGCTCACAC TTCACAATGA GCATTCGAAG TGTGTAGCAC TAATACTTTA
  CTTCAGAAGA ACCCACGGCT CGGGCTGGAG AAACACACCC AGGAGCTGCC CAGCCCTAAT
  ACCAACCGCA CGGACAAGAA CAGCTCGGCG GTTTTCGCCA CCCGCCCCCG CCCCCCTCCA
  AGCACGAGGC CCCGCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39655415	mCV25200604	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30177325					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	54 bp proximal
Rr540993	regulatory region 540993	676 bp proximal
Smad2	SMAD family member 2	544 bp upstream
Tssr151989	transcription start site region 151989	267 bp upstream
Tssr151990	transcription start site region 151990	296 bp upstream
Tssr151991	transcription start site region 151991	384 bp upstream
Tssr151992	transcription start site region 151992	624 bp upstream
Tssr151993	transcription start site region 151993	856 bp upstream
Tssr151994	transcription start site region 151994	1099 bp upstream