rs30177752 SNP Detail

Summary

• ID
  rs30177752
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8543729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGATTT TGACAGATGT
  ATGCCAATTG ATCAGATTGT TAAAACAAGT TTTCAAAGCA GTTAGGACAT TGGAGAAAAT
  ACACGATTTA TGGCATTCAA ATGAATCAGG GAGGATTTTC CTTAAAGCAA GCAGACACCA
  TCGGAAAATG CCCTTTTTCT GTTGGTTTTT TTTCAGGAAC CAGGAACATT CCACGGTAAG
  M
  ACACAGACTG CTCTTCCATT ACGTCGGAGC TTGGGAATGG GAGAGAAACA TCTCAAGAAA
  ATGAAGGAAG CGTGGAAGAA GGAGAAGATC TCGATTTCTG AGTGTTACTT AAAAGAAACT
  TCCTCGAAAG CCCTCCCTTG GTGTTACTTA AGAACCCTAC TTTGGGAGCA GTTTACCCTC
  CCAAGCCCAA ATAAAGAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46380803	mCV23954782	ABI	CRAMUS_MOUSE	f	SNP		C	A				A		A
ss60683965	NES16235407	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A		A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30177752					SNP	C	C	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683965	NES16235407	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8543729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	230 bp proximal
Rr206822	regulatory region 206822	within coordinates
Trpc6	transient receptor potential cation channel, subfamily C, member 6	414 bp upstream
Tssr83785	transcription start site region 83785	471 bp upstream
Tssr83786	transcription start site region 83786	499 bp upstream
Tssr83787	transcription start site region 83787	772 bp upstream