rs30178376 SNP Detail

Summary

• ID
  rs30178376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45236297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG CTTCTGCTCT GGAGGAGGCT
  Y
  CGGGAAGGGC AGGACCCTGC AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46381887	mCV24048463	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss136409318	ENSMUSSNP308244	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322943015	CHEV_9_45133082	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30178376					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45236297 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	118 bp distal
Rr203900	regulatory region 203900	596 bp proximal
Rr203901	regulatory region 203901	1424 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates