rs30178640 SNP Detail

Summary

• ID
  rs30178640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAC TCAAAGGCCC CTAGGGCTTA
  Y
  GCTCTCCACA GACGGTTGCT GGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46381012	mCV22322996	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss136941074	ENSMUSSNP371208	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30178640					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22277	CpG island 22277			249 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor			Intron
				mRNA-UTR
Rbm15b	RNA binding motif protein 15B			851 bp upstream
Rr401656	regulatory region 401656			448 bp downstream
Rr686406	regulatory region 686406			635 bp distal
Rr686407	regulatory region 686407			8 bp distal
Rr686408	regulatory region 686408			89 bp proximal
Tssr86941	transcription start site region 86941			1489 bp downstream
Tssr91351	transcription start site region 91351			832 bp upstream
Tssr91352	transcription start site region 91352			814 bp upstream