rs30178694 SNP Detail

Summary

• ID
  rs30178694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50799807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAACTTT TAACTCTGAA
  GGCGTAGAGT AAGGGCTTTT CCCATTGGCC CAGGGTGAGC CTCTAGATCC TGGATGCATT
  CTTCTAGAAA CTGAGCTGCT TTCTGTAGGT GAGGTTTCTG GAGAAGAGTC CAGAGAGTTC
  CCTGCACACC CAAGGACTCT GATCCTACAA TGGACAGCAT GGGGAGGAAA GGAAAGGGCC
  R
  CTCCCAGGAG GGAAGCCTCG TCTGTTAGCA CTGGCCACAG GAGGGCTAGA GGCTTTGGAA
  ATGTGCTTCC TGCTGGCCTG CAGCGTTCCG AGCTGCTCAG GCAGAGGCCA CAGGGTAGTG
  CTCTGCCCTC TGTGGCCAAT TCTTTACTGT TCTTCATAGG GTTTTGTACT TGGTATGGAA
  GTGAAGGGTG TCCTTAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46380805	mCV25209792	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136483616	ENSMUSSNP5898794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30178694					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50799807 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	452 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	within coordinates
Rr209487	regulatory region 209487	within coordinates