rs30179325 SNP Detail

Summary

• ID
  rs30179325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110485064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GAGGCTGACC TCAGAGTGAG
  W
  TGGGAATGAG AGTGGCCAAG GAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46381696	mCV25039914	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss136958697	ENSMUSSNP2455274	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323193702	CHEV_9_110558500	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30179325					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110485064 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	507 bp upstream
Cpgi22385	CpG island 22385	1556 bp distal
Cpgi22386	CpG island 22386	331 bp proximal
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	1835 bp upstream
Rr401701	regulatory region 401701	1617 bp downstream
Rr401702	regulatory region 401702	330 bp upstream
Tssr87398	transcription start site region 87398	470 bp upstream
Tssr87399	transcription start site region 87399	498 bp upstream
Tssr91642	transcription start site region 91642	1991 bp upstream
Tssr91643	transcription start site region 91643	1915 bp upstream
Tssr91644	transcription start site region 91644	1784 bp upstream
Tssr91645	transcription start site region 91645	1742 bp upstream
Tssr91646	transcription start site region 91646	386 bp downstream