rs30179333 SNP Detail

Summary

• ID
  rs30179333
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112065005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA TGCGCTGACT GAGAGAAACC
  K
  TGCACTGCAG AGCCCAGAGG GGTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46381704	mCV25391805	ABI	CRAMUS_MOUSE	f	SNP		G		T		G
ss47787455	NES11997155	PERLEGEN	MM_PANEL2	f	SNP	G		T		G	G	G	G		G		G
ss136974633	ENSMUSSNP1437532	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss323199029	CHEV_9_112138441	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30179333					SNP	G	G	T	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787455	NES11997155	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112065005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21			mRNA-UTR
				Noncoding-Transcript-Variant
Gm68368	predicted gene, 68368			420 bp upstream
Rr687421	regulatory region 687421			1604 bp distal
Rr687422	regulatory region 687422			930 bp distal
Rr687423	regulatory region 687423			within coordinates
Tssr87517	transcription start site region 87517			1686 bp downstream
Tssr87518	transcription start site region 87518			1624 bp downstream
Tssr91805	transcription start site region 91805			1318 bp upstream
Tssr91806	transcription start site region 91806			1293 bp upstream
Tssr91807	transcription start site region 91807			1115 bp upstream
Tssr91808	transcription start site region 91808			1079 bp upstream
Tssr91809	transcription start site region 91809			1034 bp upstream
Tssr91810	transcription start site region 91810			970 bp upstream
Tssr91811	transcription start site region 91811			741 bp upstream
Tssr91812	transcription start site region 91812			435 bp upstream
Tssr91813	transcription start site region 91813			401 bp upstream
Tssr91814	transcription start site region 91814			95 bp upstream
Tssr91815	transcription start site region 91815			72 bp upstream
Tssr91816	transcription start site region 91816			43 bp upstream
Tssr91817	transcription start site region 91817			26 bp upstream
Tssr91818	transcription start site region 91818			4 bp upstream
Tssr91819	transcription start site region 91819			3 bp downstream
Tssr91820	transcription start site region 91820			29 bp downstream