rs30179362 SNP Detail

Summary

• ID
  rs30179362
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40712420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCG GGGCGGGGAG AAGGCGGGAC
  M
  TAGGCGAGCG TTCTGGCTCT TCATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46381505	mCV24020648	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss136338410	ENSMUSSNP1477923	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322919698	CHEV_9_40609207	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30179362					SNP	A	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40712420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	968 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	79 bp upstream
Hspa8	heat shock protein 8	152 bp upstream
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	within coordinates
Tssr84479	transcription start site region 84479	1758 bp downstream
Tssr84480	transcription start site region 84480	1018 bp downstream
Tssr84481	transcription start site region 84481	142 bp upstream
Tssr84482	transcription start site region 84482	781 bp upstream
Tssr84483	transcription start site region 84483	1242 bp upstream
Tssr84484	transcription start site region 84484	1501 bp upstream
Tssr88972	transcription start site region 88972	338 bp upstream