rs30179423 SNP Detail

Summary

• ID
  rs30179423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG CTGGTAAGGT GGCTTATCAG
  R
  TAGAGGCACT TTCGGAAGTC TGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46380255	mCV24051255	ABI	CRAMUS_MOUSE	f	SNP		A	G	A
ss136425011	ENSMUSSNP1699983	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss322944008	CHEV_9_46039361	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30179423					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142576 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	809 bp downstream
Apoc3	apolipoprotein C-III	1772 bp downstream
Cpgi21701	CpG island 21701	773 bp distal
Rr195183	regulatory region 195183	1576 bp distal
Rr206362	regulatory region 206362	175 bp distal
Tssr84847	transcription start site region 84847	1370 bp downstream
Tssr84848	transcription start site region 84848	1292 bp downstream
Tssr84849	transcription start site region 84849	1256 bp downstream
Tssr84850	transcription start site region 84850	1214 bp downstream
Tssr84851	transcription start site region 84851	1179 bp downstream
Tssr84852	transcription start site region 84852	1082 bp downstream
Tssr84853	transcription start site region 84853	1048 bp downstream
Tssr84854	transcription start site region 84854	1035 bp downstream
Tssr84855	transcription start site region 84855	1015 bp downstream
Tssr84856	transcription start site region 84856	1004 bp downstream
Tssr84857	transcription start site region 84857	882 bp downstream
Tssr84858	transcription start site region 84858	845 bp downstream
Tssr84859	transcription start site region 84859	1854 bp upstream
Tssr84860	transcription start site region 84860	1993 bp upstream
Tssr89313	transcription start site region 89313	1303 bp upstream
Tssr89314	transcription start site region 89314	1275 bp upstream
Tssr89315	transcription start site region 89315	1252 bp upstream
Tssr89316	transcription start site region 89316	1232 bp upstream
Tssr89317	transcription start site region 89317	1223 bp upstream
Tssr89318	transcription start site region 89318	1199 bp upstream
Tssr89319	transcription start site region 89319	1189 bp upstream
Tssr89320	transcription start site region 89320	1176 bp upstream
Tssr89321	transcription start site region 89321	1151 bp upstream
Tssr89322	transcription start site region 89322	1068 bp upstream
Tssr89323	transcription start site region 89323	1016 bp upstream
Tssr89324	transcription start site region 89324	988 bp upstream
Tssr89325	transcription start site region 89325	963 bp upstream
Tssr89326	transcription start site region 89326	929 bp upstream
Tssr89327	transcription start site region 89327	815 bp upstream
Tssr89328	transcription start site region 89328	1821 bp downstream
Tssr89329	transcription start site region 89329	1892 bp downstream
Tssr89330	transcription start site region 89330	1938 bp downstream
Tssr89331	transcription start site region 89331	1971 bp downstream