rs30179759 SNP Detail

Summary

• ID
  rs30179759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47572183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAGTTT ACTCTCAAAA
  GAAAGAGCAG CTATGGAGAG TCTTTCTACC TCGTTTGACT TTTTCCATGG TCCAGTTGCT
  GAGGTATTGA GGAAGGATCT TCCCCATATT TCCTTTCTCA GGGAACAGCT GGATCACTTC
  TATGCCCGAG GCTTGAGCTG GGAAGAAGGG GAGCTAGTTA GAGAAGAAGG GAAAAGCCAA
  Y
  CCCAGGCAGA CAGGAGGGAG GCAAAGGACA GTTAGTCAAT TCTGAGGCCA CAGCTCCTGC
  CTGTGAGGCA CTAGGGCAAG ACAGCCTTAA TGGCTACGCT TCTTCAAAGG CAAACACAGA
  GGTGTCAGCA CTTGTGTCCC TGGATTAAGG TACCAACTGT GAATGTAGTA CATATCCATC
  TACTCCTGTG GCCACCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46921111	NES10949360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30179759					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46921111	NES10949360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47572183 () rs orientation: forward

Symbol	Name	Function Class
Aifm1	apoptosis-inducing factor, mitochondrion-associated 1	within coordinates