rs30180558 SNP Detail

Summary

• ID
  rs30180558
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47573311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTCTA TAAAATACTT
  TTCGGGGGAG GAGTGGGGTG AGAGTAGGTT TGCTTTATAA TCCCAGACTA GCCTTGAACT
  CATTATGCAA GCCAGTCGAA AATCTAACTC ACAATCCTCC TGTTTCTATC TCCTGATTTC
  TGGAATTTAT GTTCAAACAT GCCTGCACTC ATTTCATAAA CACTGATCAG AGTCCAACTG
  M
  TGGCAAATGT ATTTCTGGCA TTTGTGACAG TTCACCAAGA TGTGTGCTAT GTGACTAGAG
  AAAGACAGCT GAGAACAGTT GTCAATACTC ACACTTTCTG CCAAGAGCAC AGGCCAGCTC
  ACTCCCAAGG AAGCCCCCGC CGATAACTGT AATTGACTTG ACCTCCCGAG AGATCTTCTC
  CAAGGCTCTA AAATCTCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46921120	NES10949327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30180558					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46921120	NES10949327	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47573311 () rs orientation: forward

Symbol	Name	Function Class
Aifm1	apoptosis-inducing factor, mitochondrion-associated 1	within coordinates