rs30180870 SNP Detail

Summary

• ID
  rs30180870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGAAAATT CTTAGGGCTT GCTCAGGAGA TTTAGAATTC CATTTTTAAT TTCATTAGCA
  ACCACTTAAA CATGTGGTTT GGTCAACACA ACTGCTTAGG AAAGACACAA TTTTACTAGT
  TTTAGCTGAA TTAATAATAC AAAACTCAAA TGAACCCTCT GACTCCCCAA AATATAACTT
  CTCGACAAAA TTGAGCCCCT ACCCCCGCAA ATACCCTACA TTTGTTAGTT GACAGAAAAT
  AAATAGAGAT TTTTGTACTA AATGTGCACA TATGGTTATC TTGATTTATG TTTCACATTT
  W
  AAAAAAAATC ATTTTGATGA CAAAGCGACA AAGTGGAATC CCTGTTTCGG CGGACTTAAC
  TAAAAATGGG CAGCTTGGGT CGTGTCTGTT TCTATTCCGG GAGGCAGAGC TGACGGGCCC
  CAACAGATGC AGCCCTTGGA ATGCATCAGG GACAGGGAGC GGGCACAGCT GATTCTCACC
  CTTAGCCAGT AGTCCTGTGG GATCCCAGTC CTGGGCCATG ACAGTGATGC TTCAGCACAC
  GTGCGCACTC AGGGTGGTGG GCAGTGGGAA GAGCGCTCTC ACACAAGTGA CCACTGTCTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46381132	mCV25224093	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136659846	ENSMUSSNP5185844	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30180870					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544670 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	561 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	878 bp distal
Rr683390	regulatory region 683390	572 bp distal
Rr683391	regulatory region 683391	385 bp distal
Rr683392	regulatory region 683392	26 bp proximal
Tssr86194	transcription start site region 86194	908 bp downstream
Tssr86195	transcription start site region 86195	860 bp downstream
Tssr86196	transcription start site region 86196	841 bp downstream
Tssr86197	transcription start site region 86197	778 bp downstream
Tssr86198	transcription start site region 86198	768 bp downstream
Tssr86199	transcription start site region 86199	753 bp downstream
Tssr86200	transcription start site region 86200	677 bp downstream
Tssr86201	transcription start site region 86201	656 bp downstream