rs30181420 SNP Detail

Summary

• ID
  rs30181420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68788494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAGTTT GCATTTCTTT
  GATTGTAAAT GATGCTTGAT ACTCTTTATT TCTTTAGATT AAACAAAACT AGCAGTGTGG
  TGCACACCGC TATTTTCCTT TCTCGGTCAC CGGTATTATT TACTCAGTCC GATGTCTGTA
  TCCATGTCGC TCTGTGGTAG AAGGCCTCAT GTTCCCAGTT CAGCTTTCCT AAGGCATGCT
  R
  GGAGATTTAA TCAGCAACTG AAAGAGACAG TGGGGCGCGG CGTGCCCTCC ATCCAGGTCC
  CCGTGGACTC TTCGCTTTGA ATCTGCCTGC TGCTTCTCTG ACAGGTGTAC TTCTTAGCTC
  CAGAGACCTG GACCAGACAA CCCTGAGCCC TCACTCTGTC TGATGTGCCT TGGGACTTTA
  GACGTTGCCA AAATACATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46382491	mCV24203462	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss50732194	NES14251897	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A		A	A	A	A		A
ss136597044	ENSMUSSNP2931823	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss322996722	CHEV_9_68729019	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30181420					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732194	NES14251897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68788494 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	966 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Tssr85829	transcription start site region 85829	1636 bp upstream