rs30181588 SNP Detail

Summary

• ID
  rs30181588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG GTTCCAATCA CACCAAATTC
  W
  TTCTGGTCTT TGGGCACTCC CATTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46380570	mCV22323043	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss136941096	ENSMUSSNP1274424	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss323187630	CHEV_9_106793073	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30181588					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767941 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	769 bp upstream
Cpgi22278	CpG island 22278	622 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	1158 bp upstream
Rr686409	regulatory region 686409	485 bp proximal
Rr686410	regulatory region 686410	663 bp proximal
Rr686411	regulatory region 686411	1045 bp proximal
Rr686412	regulatory region 686412	1213 bp proximal
Rr686413	regulatory region 686413	1227 bp proximal
Rr686414	regulatory region 686414	1483 bp proximal
Tssr86942	transcription start site region 86942	531 bp downstream
Tssr86943	transcription start site region 86943	1372 bp upstream
Tssr86944	transcription start site region 86944	1708 bp upstream
Tssr86945	transcription start site region 86945	1734 bp upstream
Tssr91353	transcription start site region 91353	624 bp downstream
Tssr91354	transcription start site region 91354	638 bp downstream
Tssr91355	transcription start site region 91355	652 bp downstream
Tssr91356	transcription start site region 91356	659 bp downstream
Tssr91357	transcription start site region 91357	1166 bp downstream
Tssr91358	transcription start site region 91358	1189 bp downstream
Tssr91359	transcription start site region 91359	1223 bp downstream