rs30183777 SNP Detail

Summary

• ID
  rs30183777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50969296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGAGAC ACCCCAGGAA
  ACTGTTCTAT TCTGGTCTTC CTACACCTAC CATTCACTGT CTTAGTTCTA GGACTCCTTC
  GGAAATGTGG GGCCAGAAAA CAGTAGGAAA AAATTAGACT AAACCTAACC TAACCAAACC
  AAACCAAACC TTAACCAATT GAACAATAAA ACAAAACTCA TCTCTAAACA AAATTAGTCA
  Y
  ATTCTACCAT AAGTATAGAC AATAAACAAG AGTAGGATTA ATAATGTCAT TGACTCTACC
  ACCAACAGAA ATCACATTCC TATACCATAT CAGTTATTAG AGTTGCTTTG AAATATTTCA
  TGCTTACCGC TACTTCAATA TTATAATTAT ACCCACCACT AAAAATCACT AATAAAGAAA
  CACAATTCGT TTTGGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46381650	mCV24072393	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136485327	ENSMUSSNP725175	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30183777					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50969296 () rs orientation: forward

Symbol	Name	Function Class
Gm32681	predicted gene, 32681	within coordinates
Layn	layilin	within coordinates
Tssr89523	transcription start site region 89523	1536 bp upstream
Tssr89524	transcription start site region 89524	1293 bp upstream
Tssr89525	transcription start site region 89525	1000 bp upstream
Tssr89526	transcription start site region 89526	967 bp upstream
Tssr89527	transcription start site region 89527	911 bp upstream