rs30185552 SNP Detail

Summary

• ID
  rs30185552
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72571684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC ACACTAAATA AACAAACAAA
  S
  CAACCAACCT TTAGAAAAAA GCCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46381275	mCV24209378	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss136623060	ENSMUSSNP3106578	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323002782	CHEV_9_72512209	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30185552					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72571684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	988 bp distal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	1910 bp distal
Rr682798	regulatory region 682798	422 bp proximal
Rr682799	regulatory region 682799	459 bp proximal
Tssr86019	transcription start site region 86019	1990 bp downstream
Tssr86020	transcription start site region 86020	1934 bp downstream
Tssr86021	transcription start site region 86021	1879 bp downstream
Tssr86022	transcription start site region 86022	633 bp downstream
Tssr90495	transcription start site region 90495	1132 bp upstream
Tssr90496	transcription start site region 90496	1105 bp upstream
Tssr90497	transcription start site region 90497	1076 bp upstream