rs30186478 SNP Detail

Summary

• ID
  rs30186478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79313610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTCCC CGATGATGTA
  CCGAGATGAG AAGCAATGGT AGTGTGGCTT AAAATAACCA CTACCATAGA GAGAAATTAA
  AATATCAGGA TTTGGGGAGG AAACACATTC TGTGGGAGAC AAAGAAAATG AGAGGGCTGT
  GAAGTGTTGC TACAATTAAA ATGTTAATTC TAAATCTGTT TTAGCTGCAG AATTCCTCTT
  Y
  TAATTTTTTT TCCTGTGTGA TCATATGGTT CGTGTTCTGA ACGTGTTAGC TTAGGCAACC
  AGCTTAAAAT ATGCTCTGAT TAGTTCTGAA TTATTCAGCG CTAATCAGGT ACTCCTTCAA
  GTCATCTCTT CTGTGTTGCG GGTCTCCAAA GTCACAAAAT GCTTCTGAAT AAAATAATCC
  CAAAGTGAAA ACGTGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607934	NES12967505	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	T	T	C	T	T	C	T
ss144772756	ENSMUSSNP4559273	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30186478					SNP	T	C	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607934	NES12967505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79313610 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	within coordinates
Tssr129	transcription start site region 129	859 bp downstream