rs30187297 SNP Detail

Summary

• ID
  rs30187297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACGTTAA AGAAAGGAAT
  GCTTGAATAT TCTAGCAGAG TGAAAGATCA CAAGGTAATG GACCGATTGG ATCTTTTGAT
  TTAAATCTAG CTCACCTTCT CCCGGGGTTT CTAAAAAGTA GGGTTTGGTT CCCTGGAAAA
  TGGTAAAAGG ACTCGGCTCC TAAAAGCATC TGCAGAGCTC TTTCCTCTCC CTGGAGTTCT
  S
  ACTGCTTCAG AATGGATGCA AAGGCTATGA ATTCAGACAG GCACCAAATA ACCTTCTGTT
  AGAATCATTT GAGTTGTTGG TTCTATAAGG ACAACATCTT GAAGAGATTC TGGGAAAATC
  ACCTTATTCA TCAGCCATCC AGTCCTGGCA TTCCCAAAGT TTCAGCCCTT TATTCCCTCA
  CCCTGTGTTA CCCAGAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607943	NES12967494	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30187297					SNP	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607943	NES12967494	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312721 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	582 bp proximal
Tssr129	transcription start site region 129	25 bp upstream