rs30187298 SNP Detail

Summary

• ID
  rs30187298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGAGC TGACTCCCCA
  AGCTATTCCA CAGTAAAGAA TTACAACGTT AAAGAAAGGA ATGCTTGAAT ATTCTAGCAG
  AGTGAAAGAT CACAAGGTAA TGGACCGATT GGATCTTTTG ATTTAAATCT AGCTCACCTT
  CTCCCGGGGT TTCTAAAAAG TAGGGTTTGG TTCCCTGGAA AATGGTAAAA GGACTCGGCT
  Y
  CTAAAAGCAT CTGCAGAGCT CTTTCCTCTC CCTGGAGTTC TGACTGCTTC AGAATGGATG
  CAAAGGCTAT GAATTCAGAC AGGCACCAAA TAACCTTCTG TTAGAATCAT TTGAGTTGTT
  GGTTCTATAA GGACAACATC TTGAAGAGAT TCTGGGAAAA TCACCTTATT CATCAGCCAT
  CCAGTCCTGG CATTCCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607944	NES12967491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30187298					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607944	NES12967491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312679 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	624 bp proximal
Tssr129	transcription start site region 129	67 bp upstream