rs30187301 SNP Detail

Summary

• ID
  rs30187301
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCAGTT CTTATGACTC
  ATTTTAACAA GTGTGAAAAC TGTTAAATAA ATTCTTGAAT TTTTCTTTTT ACTGTTTAAG
  GATTTTTTTT ATTATAGCAA GAATTCTATA ATACAAATTA TGTTTCTTTG CTCAATCATA
  AGTTCTGCTT CTTAGAACAG AGCTGACTCC CCAAGCTATT CCACAGTAAA GAATTACAAC
  S
  TTAAAGAAAG GAATGCTTGA ATATTCTAGC AGAGTGAAAG ATCACAAGGT AATGGACCGA
  TTGGATCTTT TGATTTAAAT CTAGCTCACC TTCTCCCGGG GTTTCTAAAA AGTAGGGTTT
  GGTTCCCTGG AAAATGGTAA AAGGACTCGG CTCCTAAAAG CATCTGCAGA GCTCTTTCCT
  CTCCCTGGAG TTCTGACTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607947	NES12967486	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30187301					SNP	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607947	NES12967486	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312526 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	777 bp proximal
Tssr129	transcription start site region 129	220 bp upstream