rs30188196 SNP Detail

Summary

• ID
  rs30188196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAAAAA TGGGAAAATA
  AATCTTTGAC ATTTTAAAAG AAATTAGAAC TGATATTAAT CTTACCTGTC TCTGGGTTGT
  CTATCCTGTA CCAGGAAGGT AGATTATAGT CTTTTCTTTT TTTAGTCTTC AAATCAGATC
  TATATGGAGC AGTAAGTAGA GAAATAATAG AAGTTTATTA GAGATGATGT AGATAAATGA
  R
  AGGTGCAAAC AGCCATAATT TGAAATATTA AAATTAATAA TTTAATTATT AATTAAATTA
  GTTTGAAATA TTAAAATGTG ATAAGAGGAT CAGATTATGG AATCCTTCAT TTTGAACTTA
  GATAACTTAG AGAAGTTATT TGCCCAATTT GCTCAGCTAA CAGTTGACTA ATTTTCTGCC
  TCTCAACAGA TTGTACTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607952	NES12967553	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	G	A	A	A	G	A	A	G	A
ss144772717	ENSMUSSNP2313258	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30188196					SNP	A	A	G	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607952	NES12967553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312087 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	1216 bp proximal
Tssr129	transcription start site region 129	659 bp upstream