rs30188199 SNP Detail

Summary

• ID
  rs30188199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79311820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGCCAG CCTCTTCAGT
  CCTCCTCTCT CCATTCCTCT CAAAGCTGGG CTTATATAGG CTTGCATGAT TTCCAACTTG
  TGTGGGTGCC AGTATCCAAA CCTTGGTCCT ATTGGTTGTG CCACAAGAAC TTCTAAATTC
  AGAGCTAGCT CTCCACCCTC AACAAATTCT TCAAGATGGG CATAGGAAAC ATAACCTTCA
  R
  AGATTTAGAA AATGTCAGGT GCTTTCAAAT TAAATTGTAT CTAAAACACA AAAATGGCCG
  TGGCAGCCTG CAAAAATGGG AAAATAAATC TTTGACATTT TAAAAGAAAT TAGAACTGAT
  ATTAATCTTA CCTGTCTCTG GGTTGTCTAT CCTGTACCAG GAAGGTAGAT TATAGTCTTT
  TCTTTTTTTA GTCTTCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49607955	NES12967550	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	A	A	A	A
ss144772698	ENSMUSSNP6262105	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30188199					SNP	A	G	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607955	NES12967550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79311820 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	1483 bp proximal
Tssr129	transcription start site region 129	926 bp upstream