rs30188201 SNP Detail

Summary

• ID
  rs30188201
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79311508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCACAA CCTTTTGAAA
  GGGAACTTGT GAGCTCGTGA TGTAAAGGTG ATTCCTTGCT AATGCCTTTT ACAGAACAGC
  ATACACACCA ACTGTAACAA ATATAGTTCC TTCTTAAAGA ATGATTTAGT TGTGTGTGTG
  TGTGTGTGTG CATGCATGTG CGCGTGTGCA CTTATGTTGG AATGTGTGTA CATAACACAT
  K
  TACCCATGGA GACCAGAAGA GGTGCCAGGT GTCCTTTGTC ATGCTCTACT TGTTCCTGTG
  AGTCAGGTCT CTCCATGTAC ATGGGGCTCA CATTTTCTTG GCTATGCTGC AAACAAGCCA
  GCCTCTTCAG TCCTCCTCTC TCCATTCCTC TCAAAGCTGG GCTTATATAG GCTTGCATGA
  TTTCCAACTT GTGTGGGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49607957	NES12967616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30188201					SNP	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607957	NES12967616	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79311508 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Tssr129	transcription start site region 129	1238 bp upstream