rs30188587 SNP Detail

Summary

• ID
  rs30188587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85971562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTACAGAG AGGCCAGAAG
  AGGGTTCTGG ATCCTATGGA ACCGTAGTTA CAGATGGTTC TGAGCTGCCA TGTATATGCT
  GGGAGTTGAA TCCATGTTCT CTAGAAGACT GGCCAGTGCT CCTAACCACT GAGACATCTC
  CTCAGTCCTA TGTCAGGAAC TCTAAAATGG TAAGTTCAGA GATCAGCAGC TTCGTTTTTG
  Y
  TAGCACCCTT CTGCCTGCAA TAATACTCTA GGTACCTGGA GAGTCTCATT CCCCACTGCA
  GGAATTCCTG TCCACTTTGC TACTAGCATC GATCAGTTAT ACCCCGCAGG CACTGTGTAA
  AACAGCCTCC TGGCTTCTTT GAAGCATCCC GCTGTTTTCT AGTCCTTACC TGCCTGGTCT
  TTCAAACATT TCTTATCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47920717	NES12036703	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30188587					SNP	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920717	NES12036703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85971562 () rs orientation: forward

Symbol	Name	Function Class
Rr217180	regulatory region 217180	1439 bp proximal
Rr229214	regulatory region 229214	1640 bp proximal
Rr385055	regulatory region 385055	within coordinates
Syn3	synapsin III	within coordinates