rs30188598 SNP Detail

Summary

• ID
  rs30188598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107426628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA GGGGCTGTGT GTCCTGGCCC
  R
  TGGCCTCTGC TGACCACCCT TCTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46383519	mCV24365956	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss136948274	ENSMUSSNP3644463	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss323191578	CHEV_9_107451760	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30188598					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107426628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22291	CpG island 22291	1970 bp distal
Cpgi22292	CpG island 22292	1510 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rr368855	regulatory region 368855	1671 bp upstream
Tssr86984	transcription start site region 86984	1341 bp upstream
Tssr86985	transcription start site region 86985	1990 bp upstream
Tssr91394	transcription start site region 91394	1406 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates