rs30188743 SNP Detail

Summary

• ID
  rs30188743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106770349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG GGCTTATTAC CAATTAGACA
  Y
  ACTCTATACA TTTTTTTGCT CAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46383426	mCV22323337	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		T
ss47774680	NES11262129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	T	T	C	C	T	C
ss136941110	ENSMUSSNP6236653	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30188743					SNP	C	C	C	C	C	C	T	C	T	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774680	NES11262129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106770349 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Dock3	dedicator of cyto-kinesis 3	mRNA-UTR
Manf	mesencephalic astrocyte-derived neurotrophic factor	1212 bp upstream
Rr368849	regulatory region 368849	949 bp downstream
Rr686409	regulatory region 686409	1746 bp distal
Rr686410	regulatory region 686410	1629 bp distal
Rr686411	regulatory region 686411	1342 bp distal
Rr686412	regulatory region 686412	1174 bp distal
Rr686413	regulatory region 686413	926 bp distal
Rr686414	regulatory region 686414	220 bp distal
Rr686415	regulatory region 686415	284 bp proximal
Tssr86943	transcription start site region 86943	1027 bp downstream
Tssr86944	transcription start site region 86944	675 bp downstream
Tssr86945	transcription start site region 86945	663 bp downstream
Tssr91353	transcription start site region 91353	1777 bp upstream
Tssr91354	transcription start site region 91354	1759 bp upstream
Tssr91355	transcription start site region 91355	1753 bp upstream
Tssr91356	transcription start site region 91356	1712 bp upstream
Tssr91357	transcription start site region 91357	1230 bp upstream
Tssr91358	transcription start site region 91358	1203 bp upstream
Tssr91359	transcription start site region 91359	1180 bp upstream