rs30190366 SNP Detail

Summary

• ID
  rs30190366
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86168890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACAAAC AAGTGGCCTA
  ATGGTGGCAG GTGTCAGCTA GAACACAATG AGGCGAGAAA CATGATGGGG GGACTGTGGA
  CTTGGGGAGA AGGATGCAGG GAGGGAACAG ACATGGCAGC CTGACCAGGA TATAGCAAAT
  AGACAATGAA AGGAGCTATG CAGGAGTGAA GCAAGTGTCC AACCCTAGCA ACTGCGAAGG
  K
  AAAGACTCTG GGCTGTGTGT TTGGAGTGGT GGGTACAGGA ATGGAGCAAG CTGCCATTCC
  CCGAGACAGA GAAGGCCCTC AGAGGCCCAG TTATGGGTGT GGCCTGTTAT CAGGAGCTCA
  GCGTTGGATA AGTACCTCAC ACAGCTCAGC AGACTATCAG GGGAGAGCAC CATAGAAAGG
  CATAGAAGTC ATGGAAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922527	NES12032671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30190366					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922527	NES12032671	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86168890 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	442 bp distal
Rr436453	regulatory region 436453	within coordinates
Rr436454	regulatory region 436454	1577 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1397 bp downstream
Tssr94968	transcription start site region 94968	1366 bp downstream