rs30191928 SNP Detail

Summary

• ID
  rs30191928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86163016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCTTAC CATGGCAACT
  AGAGCTGAAG GATACAAACA AGAAGAGAAT GATGGGGAGA CCGGGAACGA GGGCCACAGG
  CAGACAAGGG GCCCTCAGAA TCTGTGACAA TGTCTATTCT GACAATAACT TATGGAAAAT
  GCAAGCACTC TTCTGATGTG TGTATGCCCA CCACGTCAGC TAATTAGAAG AAGGTTACCA
  Y
  AGAGAGAGAT AATACAATAG TTAAAAAAAA ACCAAACCAA ACCAAAACAA AACAAAAAAA
  CCAAAAACCA GGAAAGCCTG GCTTAGGTCA CAGTGCCCCA CACCGTACAG ACTAACTCTA
  GGATTGTCAT GGCAGGAAAG TTATTCTCAG TGATCCTGCA AGTTCTGTCA GTCCATTGAA
  ATGTGCCCAA CTCACCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922449	NES12032829	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30191928					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922449	NES12032829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86163016 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	within coordinates
Rr217189	regulatory region 217189	1216 bp distal
Rr217190	regulatory region 217190	1385 bp proximal
Rr220711	regulatory region 220711	1216 bp distal
Rr229228	regulatory region 229228	1786 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates