rs30192143 SNP Detail

Summary

• ID
  rs30192143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86288370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCCTT AGCAGCAACC
  CCACCTGGCT GGGCTGGGTG CCCCTCCTCC ACAGGTGAGC ACATCATACC CTCTACCTTA
  TGGTACTGCC CTGCCTTGTA ATTATACGTT ATGATCTGTC CTCTGCCTCT AAACATCCAG
  TCTGTGAGCT GTTTCTCAAT AGTCACTGCA TATGACAGCA CCCTGTGACA GGGCACAGGA
  Y
  TTTGCTTCCT ATATGTTGGC CAGGTATGGA GATGTCTCCC TTGTCCCTGC ATCCAGATCT
  TCCTTGTGAC CCTTTATTGC CACCTACTGG CAAACTGTTG CAATAACTCA CAAATCTACA
  TCTTTTATTA TATGGGTCAT TGTGTGGTTG TCCAACCTAT AGGACTGACA GCCTTGGACT
  TGATTCCAAC CCAGAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923735	NES12027996	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30192143					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923735	NES12027996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86288370 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	within coordinates
Rr229241	regulatory region 229241	within coordinates
Syn3	synapsin III	within coordinates