rs30194030 SNP Detail

Summary

• ID
  rs30194030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86289843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTTACT CCCTCCTAGG
  AGGGAGTGGC ACACAGATGG ACGATAACCA TCAGTGAAGC AGCGTAGAGA TCCAGCTCGG
  ACCAAAAGGT GCACTCTGCC CAGTCTTGGA TGGGAAGCAG GATGAGAGGC ATGTGTGGTA
  CTGATGAGGT GGCCCAGCTA GTCCACCAGC TAATCAGCTC ATCCAATATT TGTGCCTATT
  Y
  TTTGTCAGGG CCTAAGACTT CAAAGGTGTG GTGGTGGTGG TGGTGGTGGT GGTGGTGGTG
  GTGGTGGTGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA GACATGCAGA
  GGAAGACCTG GTTTGGGCGT GGGGCAGGAT TTCTGATACC TCCTGACCTG CTGTAGATAT
  CTTGGGGCCA CTCCATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923753	NES12027788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30194030					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923753	NES12027788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86289843 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	1043 bp distal
Rr229241	regulatory region 229241	644 bp distal
Rr229242	regulatory region 229242	1359 bp proximal
Syn3	synapsin III	within coordinates