rs30194524 SNP Detail

Summary

• ID
  rs30194524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105208720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCTTTT CAGCCTTGTA
  CCCATCAGAG TCTACCTACT CCAAATGCCA ACATGCTGAA GGTGCCAGAG CAGATGTCAG
  GAAAGATTCT AGTTCAATCG GGTTCTAAGT TCTTGTGTAT TGTGCTTTAC GCAACGAGAT
  CTAAGCACAA GAAGGACAAA GGAAGTGTTG AGAAGATAGG ACTGTGGCAG GACACTCGCC
  Y
  GCCATGTGCA ACCCTGATTC GGTGCCATAA AGGAACAGAG AAGGAAGGGC AGGGTGGATG
  TAAAGGGAGA GAATGGTCTT TCTAGAAACC TTAAAAGTCC CATCTTCTAC TGCCTAAAAA
  GATCAGGCTG CAAACACATC AGCCTGCTGA TAGAGAACCA TTGCCAGTGT AGCTGCTCTG
  TCACATACGT TTCAAGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39160273	mCV24676326	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss49359975	NES12571712	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		C	C	C	C	C	T	T	C	T
ss146760485	ENSMUSSNP5659615	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30194524					SNP	T	C	C	C	T	C	C	C	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49359975	NES12571712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105208720 () rs orientation: forward

Symbol	Name	Function Class
Gm24280	predicted gene, 24280	143 bp upstream