rs30194651 SNP Detail

Summary

• ID
  rs30194651
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA TCCCACTTCC ACCAATACAA
  M
  TTCCATAGAA ATTCCTGAGG AGCCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46383775	mCV22576893	ABI	CRAMUS_MOUSE	f	SNP		A	C	C
ss136948604	ENSMUSSNP223262	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss323191747	CHEV_9_107489296	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30194651					SNP	A	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	453 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	1291 bp downstream
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	753 bp upstream
Rr401663	regulatory region 401663	372 bp upstream
Rr686552	regulatory region 686552	493 bp proximal
Rr686553	regulatory region 686553	688 bp proximal
Rr686554	regulatory region 686554	1682 bp proximal
Tssr87008	transcription start site region 87008	677 bp upstream
Tssr87009	transcription start site region 87009	708 bp upstream
Tssr87010	transcription start site region 87010	746 bp upstream
Tssr87011	transcription start site region 87011	792 bp upstream
Tssr87012	transcription start site region 87012	901 bp upstream