rs30195500 SNP Detail

Summary

• ID
  rs30195500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCCTTGG ATAATACCAG CAGTTGGGAG TATGGGTCTA
  GTGCCAGAAA TAAAGGCAAC AAGTCAAGGG CAGGGGTAAA GGATTAGAGG AAGGAGAAGG
  Y
  AATAGGCAGG AGGCACAAAT GCCATGTCGT GTAAAATGCT GGAAACCAAG AGTATCATGT
  AGTACAATTC AGTGAAATCC CTAAGTACAG GGTCTAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46383784	mCV24902583	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss50674819	NES14008204	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	C		C	T	C	T	C	T	C	T
ss136309814	ENSMUSSNP1910176	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30195500					SNP	C	C	T	C	C	C	C	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674819	NES14008204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	923 bp distal
Gm48081	predicted gene, 48081	361 bp downstream
Rr676656	regulatory region 676656	1107 bp distal
Rr676657	regulatory region 676657	1002 bp distal
Rr676658	regulatory region 676658	783 bp distal
Rr676659	regulatory region 676659	282 bp distal
Rr676660	regulatory region 676660	453 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	1097 bp upstream
Tssr88821	transcription start site region 88821	1146 bp upstream
Tssr88822	transcription start site region 88822	1118 bp upstream
Tssr88823	transcription start site region 88823	1091 bp upstream
Tssr88824	transcription start site region 88824	1068 bp upstream
Tssr88825	transcription start site region 88825	1049 bp upstream
Tssr88826	transcription start site region 88826	957 bp upstream
Tssr88827	transcription start site region 88827	875 bp upstream
Tssr88828	transcription start site region 88828	845 bp upstream
Tssr88829	transcription start site region 88829	827 bp upstream
Tssr88830	transcription start site region 88830	799 bp upstream
Tssr88831	transcription start site region 88831	766 bp upstream