rs30196354 SNP Detail

Summary

• ID
  rs30196354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86166445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCACAG GATGGGATGT
  GGCCTGAACA AGCTGAACCT GCTTTTCCTA CCTGCCAAGG CTGCTGCAAG GGGATCAGCA
  GGGGCAGGCC CGGAAGAGCT TTCTGTGGGA GCTTTGTTTA GGCTCCTGAG CCTGAGTCTC
  TCATCTCTCA TGGGGTCTGA GTGCAGCCCT TCCACAGAGA CAGCAGGTTG ACTGAGGCCT
  Y
  TTGTAACAAC ATCCTCTGAC TCACTCCTCC TGGAGTGCCA ATCTTCCTGT TTGGGACCAG
  GGTCACTTCT TGGACACATT CACTTTCTTC TTCCTTCTTC CCACTTCTTC CTTTTCCTCC
  TCCTTGTCCT TCTCTTCCTC CTCCTTCCTC CTCCTCTTCC TTCTTCCCCC TCTAGTTTCT
  TGTCTAAATA GCTGTTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922499	NES12032731	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30196354					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922499	NES12032731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86166445 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	1265 bp downstream
Rr436450	regulatory region 436450	1450 bp distal
Rr436451	regulatory region 436451	782 bp distal
Rr436452	regulatory region 436452	917 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1045 bp upstream
Tssr94968	transcription start site region 94968	1071 bp upstream