rs30196362 SNP Detail

Summary

• ID
  rs30196362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGGGAT GCTGCTCAGT
  GCCAAAGAAC TCATCATAGA AGAAAAATCC CCAGAAGGAA AAGCAGAGTA TTGGGACAGA
  AGAGAGTAGC CTGGCCTGCA GAGACAGGCT TCCAAGGGGA GGCTGCATTT CAGTTAAAAG
  GACCCTGATG TGTAGATACA TTCATGGGAA GGAGGTAGAA GCCCACGAAG CACCTTCCTG
  R
  TGCCTTGCAA ACTTACGCCA CAGAAATACC ATGTGCTTCC TCAGATTGGA TGCCCTTGCT
  CCCAGCTAAG TCAACTTTAT ATCCAGGAAC CAGCCACCTT AGGACTTTTG CCCTGTCCTT
  GGCAAAATGA TGCATATATC TTTCTCCCAA ATTGCCAGTG GCCCAGGAAG CAATTAAGGA
  TGGCTGCCTT TAAAAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47922507	NES12032695	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30196362					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922507	NES12032695	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167036 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	1856 bp downstream
Rr436451	regulatory region 436451	1373 bp distal
Rr436452	regulatory region 436452	326 bp proximal
Rr436453	regulatory region 436453	1535 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	454 bp upstream
Tssr94968	transcription start site region 94968	480 bp upstream