rs30197307 SNP Detail

Summary

• ID
  rs30197307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTGATG TGTAGATACA
  TTCATGGGAA GGAGGTAGAA GCCCACGAAG CACCTTCCTG GTGCCTTGCA AACTTACGCC
  ACAGAAATAC CATGTGCTTC CTCAGATTGG ATGCCCTTGC TCCCAGCTAA GTCAACTTTA
  TATCCAGGAA CCAGCCACCT TAGGACTTTT GCCCTGTCCT TGGCAAAATG ATGCATATAT
  Y
  TTTCTCCCAA ATTGCCAGTG GCCCAGGAAG CAATTAAGGA TGGCTGCCTT TAAAAGCAAG
  TGCATTAATC CAAACCTCAG AAGGTGCCTG AGGCTGACGA CCCCTGCCAT TTGCTTCTAA
  GAGCTTCACA CCGAGGTCAT CGCTGTGACT AGGAAAGCAG GAGCATGCTG GAGGTTTTGT
  TTTCTGTTCC TTTGGGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922513	NES12032698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30197307					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922513	NES12032698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167176 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	1996 bp downstream
Rr436451	regulatory region 436451	1513 bp distal
Rr436452	regulatory region 436452	186 bp proximal
Rr436453	regulatory region 436453	1395 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	314 bp upstream
Tssr94968	transcription start site region 94968	340 bp upstream