rs30197309 SNP Detail

Summary

• ID
  rs30197309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAACTTTA TATCCAGGAA
  CCAGCCACCT TAGGACTTTT GCCCTGTCCT TGGCAAAATG ATGCATATAT CTTTCTCCCA
  AATTGCCAGT GGCCCAGGAA GCAATTAAGG ATGGCTGCCT TTAAAAGCAA GTGCATTAAT
  CCAAACCTCA GAAGGTGCCT GAGGCTGACG ACCCCTGCCA TTTGCTTCTA AGAGCTTCAC
  M
  CCGAGGTCAT CGCTGTGACT AGGAAAGCAG GAGCATGCTG GAGGTTTTGT TTTCTGTTCC
  TTTGGGGTGA CCAAGTTCCA GGCAATCTGA CCTCCTGGAC CTGGACCTCT CTTGCCTCCC
  TTCCATGGCC CCTTTAGTTC ATACACAAAC AATGTCAACA GGGGCTGTTT CCTGGTTTCT
  GACTCAAGCA GACTTGCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922515	NES12032699	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30197309					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922515	NES12032699	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167306 () rs orientation: forward

Symbol	Name	Function Class
Rr436451	regulatory region 436451	1643 bp distal
Rr436452	regulatory region 436452	56 bp proximal
Rr436453	regulatory region 436453	1265 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	184 bp upstream
Tssr94968	transcription start site region 94968	210 bp upstream