rs30197311 SNP Detail

Summary

• ID
  rs30197311
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAACC AGCCACCTTA
  GGACTTTTGC CCTGTCCTTG GCAAAATGAT GCATATATCT TTCTCCCAAA TTGCCAGTGG
  CCCAGGAAGC AATTAAGGAT GGCTGCCTTT AAAAGCAAGT GCATTAATCC AAACCTCAGA
  AGGTGCCTGA GGCTGACGAC CCCTGCCATT TGCTTCTAAG AGCTTCACAC CGAGGTCATC
  S
  CTGTGACTAG GAAAGCAGGA GCATGCTGGA GGTTTTGTTT TCTGTTCCTT TGGGGTGACC
  AAGTTCCAGG CAATCTGACC TCCTGGACCT GGACCTCTCT TGCCTCCCTT CCATGGCCCC
  TTTAGTTCAT ACACAAACAA TGTCAACAGG GGCTGTTTCC TGGTTTCTGA CTCAAGCAGA
  CTTGCACAGT GCCTACAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47922517	NES12032700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30197311					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922517	NES12032700	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167318 () rs orientation: forward

Symbol	Name	Function Class
Rr436451	regulatory region 436451	1655 bp distal
Rr436452	regulatory region 436452	44 bp proximal
Rr436453	regulatory region 436453	1253 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	172 bp upstream
Tssr94968	transcription start site region 94968	198 bp upstream