rs30198888 SNP Detail

Summary

• ID
  rs30198888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86286664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCCTCA TTCTCTCCCT
  TTTCCTCAGC AGAAACATTC ACAGGTTAGC ACAGGTTAGC ACACAAAGCT ATAGCCCCGA
  GTCTCCCGGA TGTTAGGTGT GGCCACACAA CCCAGTTCTG ATGGATAATC TGTAAGCATC
  ATGCTCACAA ACTTTCTCTG AACTTTCTTC ATTCTATTCT TGTCCCTGGA GCAGGGAACG
  R
  TTTGCTCAGT CTTCTTTTGT GAAAGGGTTC TTTCTACAAA TTCTTAGAAT GCTTCCCTGT
  CTGTGTTCAC AAGCCCCTAT GGCTTCTCAG CCAACGTCAG TAGTACCTTC CTCTCCCAAG
  ACTTCCAGCA TCCTTGACTG ACAGCGTCAA TATTTGTGGT ACTTTTTCTT ACAATATTAA
  CAGGCTAAGA TGTCACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923709	NES12028062	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30198888					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923709	NES12028062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86286664 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	937 bp proximal
Rr229241	regulatory region 229241	1233 bp proximal
Syn3	synapsin III	within coordinates