rs30198892 SNP Detail

Summary

• ID
  rs30198892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86286884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGGGTT CTTTCTACAA
  ATTCTTAGAA TGCTTCCCTG TCTGTGTTCA CAAGCCCCTA TGGCTTCTCA GCCAACGTCA
  GTAGTACCTT CCTCTCCCAA GACTTCCAGC ATCCTTGACT GACAGCGTCA ATATTTGTGG
  TACTTTTTCT TACAATATTA ACAGGCTAAG ATGTCACTGG GGCTGGACTT TTGTGGGACA
  R
  GAATGGTTGG TATGATCTGA AAGTAAGGTG TCCCTTTGTT TCTTTCCCAT GGGTGCTCTT
  CAATTGTGTG TAGCTAGTCT CACCCAATGC AGAATTTCAT CACGAGTCTT CAACAAGGGA
  GTCAGCACAT TCCATCCCAC TTACAGTATT TGTGGGGCCT GAGGGGGGGA CAGCAAATGG
  CCTATGAGGC GTATGACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923713	NES12028064	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30198892					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923713	NES12028064	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86286884 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	717 bp proximal
Rr229241	regulatory region 229241	1013 bp proximal
Syn3	synapsin III	within coordinates