rs30199688 SNP Detail

Summary

• ID
  rs30199688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86287589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCAATC TGATCTAGTC
  AGTTCCCGGG TTGATGCTCT CAGGCGATTC TACACTGAGA CAAGATGACA CTGAAAATGA
  ACTACCACCA TGACTAGAGT TAGCAAACAT TTAAATACAA TATTTGCATC CCTTCTTTGA
  TGACTACAGC TCATAAGGAC ACATCCAGAC TGTAGCAGCA TGGCAATGGC CAGCGTGGTC
  Y
  TTACTCTTAA TTCCCATTCT TCCCTAGTTC TCAGTTACTC TCCTCTCTCC ATTCTTCACT
  CTGCACCCCT GCAGATTCCA GTGTTCTTCT CCCTAGTACT TGACCTTCTC ATCAACCCCC
  AAGAGGGAAT GGGGCAGGAT CGCCACCCAT ATCCTGTAGA TGGAGAAGTT GCCATTTAAG
  GTCTCATAAG TTTCCCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47923721	NES12028026	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30199688					SNP	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923721	NES12028026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86287589 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	12 bp proximal
Rr229241	regulatory region 229241	308 bp proximal
Syn3	synapsin III	within coordinates