rs30200611 SNP Detail

Summary

• ID
  rs30200611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27369229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAGGAAAGC TACTGGCAGT TGATGCCTGC AGAGGAAGGG AGAATTATTC TCCTTGGGGG
  TTGTGGTTGC TGACAGGTTG CCCATGATCC AGTAGATGGC TACACACTCA TGTGTTTTGA
  ACTAATTCAT ACAAAACAAA AAAGAGGGCA TGCATCTGGA AATGACGTGG AGTTGGGACA
  CTAGAGGGGG CTGGAGAGAG TCTGTGGTAG ATGCACACAG TCAGTACACA TAGTCTGTCC
  TAGTTAGCAC TCTTTGCTGT TGTAAAACAT TGACCAAAAC TCACTTGAGG GGGGGAAAAG
  K
  ATTTATCAGG CTTATGGGTT AAAGTTCATC TTTAAGGAGA GCAAAGGCAG GAACTGAAGT
  AGAGACCATG GAAACATATT GCTTACTGGC TTGCTTCTCT AGCTTGTTCA GTTTCCTCTG
  TTATACAGCT CAGACTTGTC TACCCAGGAA TGGTACTGCC CACAGTGGTC TAGGTCCTTC
  CATGTCAACT AACAATCAAG AAAGATACTC CCAGAGGATG GTCCAATATT ACCAATTCCT
  TAATTGATGT TCTGTCTTTT CAGGTATGTT GAGTTGACAA CTGAAATTGA CTATGTCATT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45404133	mCV24242155	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss134703847	ENSMUSSNP2048144	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30200611					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27369229 () rs orientation: forward

Symbol	Name	Function Class
Rr574391	regulatory region 574391	29 bp distal
Rr574392	regulatory region 574392	1644 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10	1997 bp upstream
Tssr28624	transcription start site region 28624	1816 bp upstream
Tssr28625	transcription start site region 28625	1939 bp upstream
Tssr28626	transcription start site region 28626	1979 bp upstream
Tssr32848	transcription start site region 32848	1900 bp downstream