rs30202385 SNP Detail

Summary

• ID
  rs30202385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86171974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATTAAAA TTGGAAAACA ATCACATGAT CAGGATCAAC
  TTTGTGCACC AATGGTGTAA TCCATTATTT CTTCTTTGTG TGCTGAGCAG CATGCCAGAG
  Y
  AGAGGCAGAC AGGCACATAA TCAATTCTTA AGATTTTAAG TTAAAAAGGA CAGTGTGCCC
  ACATCTTGGC AGCAGGTTTG CAGATGCCTA CATCATGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45405012	mCV24949248	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss135445642	ENSMUSSNP6578837	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320829441	CHEV_3_86068589	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30202385					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86171974 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	1092 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1210 bp downstream