rs30203570 SNP Detail

Summary

• ID
  rs30203570
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16235455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA GTACTAGCTA GCAGAGTGAA
  K
  TTGGGAAAGA GTTTTACACA CAGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45404165	mCV25303448	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss134642346	ENSMUSSNP6322744	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30203570					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16235455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	1590 bp proximal
Gm64384	predicted gene, 64384	1231 bp downstream
Rr397612	regulatory region 397612	1693 bp upstream
Rr573789	regulatory region 573789	905 bp distal
Rr573790	regulatory region 573790	1431 bp proximal
Rr573791	regulatory region 573791	1956 bp proximal
Tssr28473	transcription start site region 28473	1886 bp upstream
Tssr28474	transcription start site region 28474	1917 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	1921 bp upstream