rs30204023 SNP Detail

Summary

• ID
  rs30204023
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA GAGGGGACTC GAAAGCTCCA
  K
  TTGGAGGGAC GGAAGACAGT CATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39657030	mCV23896691	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss147658587	ENSMUSSNP2345240	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T		G
ss325714167	CHEV_18_86564083	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30204023					SNP	T	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	326 bp distal
Cpgi10353	CpG island 10353	110 bp proximal
Gm54041	predicted gene, 54041	916 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	261 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	81 bp upstream
Tssr152243	transcription start site region 152243	102 bp upstream
Tssr152244	transcription start site region 152244	119 bp upstream
Tssr152245	transcription start site region 152245	227 bp upstream
Tssr152246	transcription start site region 152246	261 bp upstream
Tssr152247	transcription start site region 152247	311 bp upstream
Tssr152248	transcription start site region 152248	493 bp upstream
Tssr152249	transcription start site region 152249	584 bp upstream
Tssr152250	transcription start site region 152250	855 bp upstream