rs30204798 SNP Detail

Summary

• ID
  rs30204798
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5640853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC TCAATCTAGT ACTGTTCTAA
  M
  GGCGAGGAGG CGCTTTCCGG GCTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45405543	mCV25092914	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss134542989	ENSMUSSNP1259111	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
ss320638395	CHEV_3_5575793	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30204798					SNP	A	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5640853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12950	CpG island 12950			within coordinates
Gm6146	predicted gene 6146			409 bp upstream
Pex2	peroxisomal biogenesis factor 2			Intron
				mRNA-UTR
Rr573198	regulatory region 573198			within coordinates
Rr573199	regulatory region 573199			325 bp proximal
Rr573200	regulatory region 573200			580 bp proximal
Rr573201	regulatory region 573201			709 bp proximal
Tssr28281	transcription start site region 28281			86 bp upstream
Tssr32526	transcription start site region 32526			301 bp downstream
Tssr32527	transcription start site region 32527			318 bp downstream
Tssr32528	transcription start site region 32528			379 bp downstream
Tssr32529	transcription start site region 32529			426 bp downstream
Tssr32530	transcription start site region 32530			440 bp downstream